Protein Sequences and Structure Databases

PROSITE: Prosite i s a database of biologically significant patterns and profiles formulated in such away that it can rapidly and reliably determine to which known family of protein the new sequence belongs.

HSSP: Protein sequence alignments and motifs

Pfam : Pfam is a collection of protein domain families.

ProDom : ProDom is a database of protein domain families.

TransTerm : Protein translation initiation and termination motifs in DNA sequences

O-GLYCBASE : Glycoproteins with O-linked glycosylation sites

PRINTS Prints ia diagnostic collection of protein fingerprints.

Blocks Database Blocks are ungapped alignmemnts representing conserved protein regions.

ProClass : Databse of protein families and organises non redundant sequences entries.

PIR-ALN : Database of curated protein sequences alignments including superfamilies , families , and homology domain alignments.

SMART : Simple Molecular Architecture Research Tool is a Database of protein signalling and extracellular domains.

HIV Molecular Immunology Database : Human immunodeficiency virus epitopes

MIPS (Munich Information Center for proteins) : Database of protein sequences and complete genomic sequences

SWISS-PROT/TrEMBL : Having protein sequences including description of the function of the protein , domain structure , post translational modification variants.

HUGE : A database for large human proteins.

SBASE : Annotated protein sequence segments

The Homeodomain Resource : Homeodomain is a comprehensive collection of protein sequences, structures, and genomic information

AARSDB : Its a compilation of aminoacyl-tRNA synthetase sequences

PhosphoBase A database of protein phosphorylation sites

PIR (Protin Information Resources) : Protein sequences database.

SCOP : Structural Classification Of Protein is a database of all known protein structures.

BioImage : Multidimensional biological images.

mitoDat : Collection of mitochondrial proteins

GenProtEC: Escherichia coli genes, gene products and protein homologies

ESTHER : Curation of esterases and alpha/beta hydrolase sequences

SWISS-2D PAGE Database of protein 2-dimensional images

NRR : Structure and function of nuclear receptor proteins

GPCRDB : Curation of G protein-coupled receptor genes

Membrane Protein Database :Curation of membrane proteins

MHCPEP : Database of Major histocompatability complex (MHC) binding peptides

Histone Sequence Database : The histone database is an annotated and searchable collection of all available histones and histone fold sequences.

PROMISE : Prosthetic Center and Metal Ion in Protein active Sites , database of comprehensive sequences, structural , functional and bibliographical information on metalloproteins and other complex proteins.

ORDB Curation of olfactory receptor-like molecules

MEROPS A catalogue and structure based classification of peptidase sequences

IMGT : The International Immunogenetics Database is a curation of immunoglobulin (Ig), T cell receptors (TcR) and major histocompatability complex (MHC) genes.

REBASE : Maintained by New England Biolabs. Information on about 3500 restriction enzymes and

InBase Curation of inteins,interveining sequences that splices as protein not RNA.

MITOP : Classification and annotation of mitochondrial proteins.

LIGAND : Containing the information on chemical substances, chemical reactions and enzymes.

ENZYME : Its a repository of information on enzyme nomenclature.

KEYnet : Protein and DNA keyword heirarchy

Wnt Database : Wnt/wingless (wg) and frizzled genes and proteins

Endogenous GPCR List : G-protein coupled receptors (GPCR) and cell lines in which they are expressed

Prolysis : Protease/peptidase nomenclature, classification, and chemistry

PKR : Protein kinase classification, chemistry and evolution

Peptaibol Database : Structural characteristics of short, anti-microbial peptides

Kabat Database : Proteins of immunological interest

PPMdb : Plant plasma membranes of Arabidopsis thaliana

The Ribonuclease P Database : The Ribonuclease P Database is a compilation of ribonuclease P sequences, sequence alignments, secondary structutres,3D models and accessary information .

PRESAGE : Database of protein structure annotation

MMDB: Maintained by NCBI ,NIH and NLM , its a database of protein structure sequences and related literature.

CATH : CATH is a hierarchial classification of 13359 protein domain structure into evolutionary families and structural grouping

ProTherm : Thermodynamic databases for protein and mutant.

RESID Post-translational covalent modification of proteins.

LGIC Ligand gated ion channels, including DNA and protein sequences, alignments and phylogeny.

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